SE2821169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10174
  • Sorghum bicolor
  • SE2821169
  • Mutator
  • M10
  • chromosome_3:9760090-9760528
  • GTAATAAAA
  • GGCAAAATATTCAGTGCAAACCACATCTTTGGTGCAATCGTGAAAACCCT

Secondary structure and sequence

TSD    TIR
5'



3'
GTAATAAAA                                       -       C   TTGC     C       T  A                                                 A    TT                            TGA                A               C             G   AAA
         GGCAAAATATTCAGTGCAAACCACATCTTTGGTGCAATC GTGAAAA CCT    AAAAT ATATTTA GA TTTTTAAAAAATTTAAAACTATGCACACCAATAGTGCATATGTAGATGT CATT  TCACAAAATTTGAGATTCAAACTCGTTT   AAAAATGCGTATGAAA TAACAAATTTCATTT CATATGCACTAGA GAC   
         ||||||||||||||||||||||||||||||||||||||| ||||||| |||    ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||||||||| |||   A
         CCGTTTTATAAGTCACGTTTGGTGTAGAAGCCACGTTAG TATTTTT GGA    TTTTG TATGAAT CT AAAAGTTTTTTAAATTTTGATACGTGTGGTTATCACGTATACATCTACA GTAA  AGTGTTTTAAACTCTAAGTTTGAGTAAA   TTTTTATGCATACTTT ATTGTTTAAAGTAAA GTATACGTGATCT CTG   
AAAATAATG                                       G       A   -TAA     A       T  C                                                 C    -C                            TCG                -               C             A   CTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End