SE2851174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10179
  • Sorghum bicolor
  • SE2851174
  • PIF/harbinger
  • To107
  • chromosome_4:8855925-8856185
  • TAC
  • GGGGCTGTTTGGTTCGCGCCCATACTTTGCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC    C         C   C       T    T GGTGA     GGAGTGGAGGCAGCTGTTTGGTTCTACTTTTAGCTGTGGCGGCCACTGGCCTTTCTTTCTTGTCTTTTGTTGCTTGTGGTTGTTGTG
   GGGG TGTTTGGTT GCG CCATACT TGCC C     GCCAC                                                                                       
   |||| ||||||||| ||| ||||||| |||| |     |||||                                                                                        
   CCCC ACAAACCAA TGC GGTGTGA ACGG G     TGGTG                                                                                       
CAT    A         A   T       C    T -----     TTACTACCGTCGGCATCGTATCACACCGCCACCGCCTTTTTTGCGGGCGGTGTGAACGGTGCCGGAGCGGTATTAGACGTACGCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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