Plant MITE

SE2851181

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10186
Sorghum bicolor
SE2851181
PIF/harbinger
To11
chromosome_5:41849456-41849692
TAA
AGGCCCTGTTTGGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TA   CCC          GCCC              ----    ATCACATTGAATGTTTGGGCACATGCATGGAGTACTAAATATAGACTATTTACGAAACTAAAAACACAGCTGGAGA
  AGG   TGTTTGGTTT    TGTTAAAGTTTAGC    GTCT                                                                            
  |||   ||||||||||    ||||||||||||||    ||||                                                                            G
  TCC   ACAAACCAAA    ATAATTTCAAATTG    TGAC                                                                            
AA   CCC          ACCC              TCCA    ATCGTCAAAGCAGAATAAACTGTTAATCATAGGTTAGTACCTGATTAATCTGAATTTTCTAAACAGACAGTTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851181

TAAGGCCCTGTTTGGTTTGCCCTGTTAAAGTTTAGCGTCTATCACATTGAATGTTTGGGCACATGCATGGAGTACTAAATATAGACTATTTACGAAACTAAAAACACAGCTGGAGAGTAATTTGACAGACAAATCTTTTAAGTCTAATTAGTCCATGATTGGATACTAATTGTCAAATAAGACGAAACTGCTACAGTACCTGTTAAACTTTAATACCCAAAACCAAACACCCCCTAA

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