SE2851183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10188
  • Sorghum bicolor
  • SE2851183
  • PIF/harbinger
  • To4
  • chromosome_8:12352664-12352898
  • TTA
  • AGGCCTTGTTTAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 ----CAAAAATTTTC     TTCCCATCACATCGAATCTTTGTACACATGCATGGAGCATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGTC
  AGGCCTTGTTTAGTTTG               AAGAT                                                                                
  |||||||||||||||||               |||||                                                                                T
  TCCGGAACAAGTCAAGC               ACGAT                                                                                
AT                 ATAAAAAAAACCAAA     GACATCGTAAAACAAACATACACTGTTAATAATAGTTTAATATCTCATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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