Plant MITE

SE2811184

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10189
Sorghum bicolor
SE2811184
Tc1/Mariner
St9
chromosome_9:47112330-47112595
TA
TACTCCCTCCATCCCAAATTATAAATCATTTCAAAAGAATGTTGGAGAGTCAAAGCATCTCAACTTTGACCAAAATTATAAAGAGAATTAAAAAGATTTAT

Secondary structure and sequence

TSD TIR

5'

3'

                        A        AA     G             G        C          A     --AA    AT   A  G      AACA    ATA       C   GAAAATATAAT
TACTCCCTCCATCCCAAATTATAA TCATTTCA  AGAAT TTGGAGAGTCAAA CATCTCAA TTTGACCAAA TTATA    GAGA  TAA AA ATTTAT    TCAA   GGTATTA TAT           
|||||||||||||||||||||||| ||||||||  ||||| ||||||||||||| |||||||| |||||||||| |||||    ||||  ||| || ||||||    ||||   ||||||| |||            
ATGAGGGAGGTAGGGTTTAATATT AGTAAAGT  TCTTA AACCTTTTAGTTT GTAGAGTT AAACTGGTTT AATAT    TTCT  ATT TT TAAATA    AGTT   TCATGGT ATG           
                        C        --     G             G        C          A     ACCA    --   A  A      CCAC    GAA       A   TAAGAAGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811184

TACTCCCTCCATCCCAAATTATAAATCATTTCAAAAGAATGTTGGAGAGTCAAAGCATCTCAACTTTGACCAAAATTATAAAGAGAATTAAAAAGATTTATAACATCAAATAGGTATTACTATGAAAATATAATTAATGAAGAATGTAATGGTACTAAGTTGACACCATAAATATTATTATCTTACCATATAAATTTGGTCAAACTTGAGATGGTTTGATTTTCCAAGATTCTTGAAATGACTTATAATTTGGGATGGAGGGAGTA

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