SE2831188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10193
  • Sorghum bicolor
  • SE2831188
  • hAT
  • Hat81
  • chromosome_10:47073160-47073916
  • CTTCCTCC
  • TAAAGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCCTCC           AGGCA        CCG      --       GATGGGTTTTTGCTCTATTAGGGTAAGGATATGGGTCAACTTTGCTACCCGTGGGTTTGTTAATGGGGCAAAAGCTAGACCCAGCGGGTTTGTGGGCATAGGTCTAGGTGTGTAGTACCCAAACCCGCAAACCCATGGGGTTTTTAAATCCAAATCACCATATCATCACACAATATAATTAGTACATAAAGTACAAAATGCAAAAAAAACAAAATAGAGAACATGCATGCTCCATACTTTTTTTAGTAGAAGCTCCTTATGTGAAAGCTGCAGCTAGCTAGTGCGTCTTAGTGCATGCACTCAGTTCATCTAGACTCAAAGATATGACAGATG
        TAAAGATGGCA     ATGGGTAC   AGATCC  GAAACCC                                                                                                                                                                                                                                                                                                                                             
        |||||||||||     ||||||||   ||||||  |||||||                                                                                                                                                                                                                                                                                                                                             T
        ATTTCTACCGT     TGCCCATG   TTTAGG  ACCCAAA                                                                                                                                                                                                                                                                                                                                             
CCTCCTTC           -----        ---      TG       ACGGTAGGGTTTGGGTACAGGTAATTATATTTTATACGGGTGATTTTTTGGGTACTGGGCAGTGCCCAAACTAAAACACGGGTTTGGGTATGGGTAGCCCAGTGCCCATAAATTGCCCAACAGGCACGAGCAGTGTCGTACAGTATTCTACCAGTAGGTCAGTTCACTCGTTCAGATGAGATATCGCGTGGTTTTATGAATTTCAACTTAATTAACCGTTCCACCCTGAGTACAATACACAATAATGTGGAGACGTGATCTTTAAACGCTCAAGAGTGTCTTTGTGAGTGGAGATCGTACGTGACCCGGTACTGGACGATTACGAGCTACGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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