SE2851189

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10194
  • Sorghum bicolor
  • SE2851189
  • PIF/harbinger
  • To1
  • chromosome_5:442220-442468
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CACCCCGAAA  C          TAA          CACATCGAATCTTACGGCACATGCAGGAAGCATTAAATATAGACAAAAACAAAAACTAATTACACAGTTTATCTGTA
  AGGCCTTGTTTAGTT          TC AAAAAGTTTT   GATTTTTCGT                                                                             
  |||||||||||||||          || ||||||||||   ||||||||||                                                                             A
  TCCGGAACAAATCAA          AG TTTTTTAAAG   CTAAAGCGAT                                                                             
AA               ----------  C          --C          GACATCGTGAAAGCAAAAATAAACTGTTTATAACAGGTTAGTACTTGATTGATCCTATTTTTCTAAGCAGAGCACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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