SE2851191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10196
  • Sorghum bicolor
  • SE2851191
  • PIF/harbinger
  • To1
  • chromosome_2:76078805-76079287
  • TAA
  • AGGCCTTGTTTACTTCTAAATTTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TA            C    -   TTT     CAAAA   GAATA               G                 C                   C                  CA    - -   C                          A            A  C   A   AC   TA                  -     -     G    GCAAAAT      - -       ACAA
  AGGCCTTGTTTA TTCT AAA   TTTTG     TGT     GTAGCACTTTCGTTT TATTTGACAAATATTGT TAATTATAGACTAACTAGG TCAAAAGATTCGTCTCGT  ATTT C GAC AAACTGTGTAATTAGTTTTTATTTTC TCTATATTTAAT TT CAT CAT  GTC  AAGATTCGATGTGACGGG AATCT GAAAA TTTT       TTTTGG G GAACTAA    
  |||||||||||| |||| |||   |||||     |||     ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||| | ||| |||||||||||||||||||||||||| |||||||||||| || ||| |||  |||  |||||||||||||||||| ||||| ||||| ||||       |||||| | |||||||     
  TCCGGAACAAAT AAGG TTT   AAAGC     GCG     CATCGTGAAAGCAAA ATAAACTGTTTATAACA GTTAGTATTTGATTGATCC AGTTTTCTAAGCAGAGCG  TAAA G CTG TTTGACACATTAATCAAAAATAAAAG AGATATAAATTA GA GTA GTA  CGG  TTCTAAGCTACACTGCCC TTAGA CTTTT AAAA       AAAACC C CTTGATT    
AA            C    C   TTT     TTAAA   -ATGA               A                 A                   T                  -C    T T   -                          C            A  A   C   CA   TG                  C     A     G    ---ACCT      T A       CCGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End