SE2851193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10198
  • Sorghum bicolor
  • SE2851193
  • PIF/harbinger
  • To109
  • chromosome_2:10647356-10647649
  • TTA
  • AGACTATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             CAAAAAT     AAATATAAG     --T    T  TTA      -----   ACAAGCAAAATATTCAATACTCATTCGACATCTTCTCCAACAACAATACCTAAAAGAGAATCCTTTCTGCAAATGGATTTCTAGA
  AGACTATCTCCAA       ACCTA         ACTCA   TCAA AT   GATAGT     GCT                                                                                     
  |||||||||||||       |||||         |||||   |||| ||   ||||||     |||                                                                                      
  TCTGATAGAGGTT       TGGAT         TGAGT   AGTT TA   CTATCG     TGG                                                                                     
AT             -ATACTC     --ATACCCG     TTT    T  --C      TCCTC   ATTTTAGTCGGGTGTTGTTTTATGATATACCCTCTGGATAAAATCCAACAAATTCCCTGTGTTGCATTTATACTCATAGGAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3