SE2851197

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10202
  • Sorghum bicolor
  • SE2851197
  • PIF/harbinger
  • To1
  • chromosome_8:55289937-55290183
  • TTA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               ACAC        -CCAAAACTTTA     ----   TCCATCACATCGAATCTTGCGGCACATGTATGGAACGTTAAATATAGATAAAAAATAACTAATTGCACAGTTTAG
  AGGCCTTGTTTAGAT    CCAAAAAC            CAAGA    TTC                                                                           
  |||||||||||||||    ||||||||            |||||    |||                                                                            
  TCCGGAACAAATCTA    GGTTTTTG            CTGTG    CGT                                                                           
AT               ----        AAAAACCTAAAA     ACAT   GAAAGCAAAAATAAACTGTTTGTAATAAGTTAGTACCTCGTTGATCAGAATTTTCTAAGCAGAGCACTAAATGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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