SE2851202

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10207
  • Sorghum bicolor
  • SE2851202
  • PIF/harbinger
  • To60
  • chromosome_10:1906046-1906407
  • TTA
  • AGAGCATCTCCAAAGGCTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT             A  C    GCAAA    -CTTG       TT CT      ---   -    CATAACAAAATACAAAGGATA    T    CAT      G  AATTG         --    GCAAAGGATAAAAATAGAAGGTCTCCAGGCGCGCGCGCTTTCCTCGCGCGTGACTTTGCTCGCGCGATCG
  AGAGCATCTCCAA GG TTTG     TTGA     GCATTTG  G  ATTTGC   AAA CTCC                     AAAA AGGT   ATCCAA GG     GCATTTGGA  CTTG                                                                      
  ||||||||||||| || ||||     ||||     |||||||  |  ||||||   ||| ||||                     |||| ||||   |||||| ||     |||||||||  ||||                                                                      G
  TCTCGTAGAGGTT CC AAAC     AACT     CGTAAAC  C  TAAACG   TTT GAGG                     TTTT TCCA   TAGGTT CC     CGTAAATCT  AACG                                                                      
AT             C  A    --ATA    CCAAA       -T AT      GTT   C    ---------------------    C    ---      G  -AAAA         CA    TTAAACCCGTTGAACCGTTTACTCCCTCGTTTGAACCGTTTTTACGGTTCGACACCTGCTGAAACGTTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End