Plant MITE

SE2851206

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10211
Sorghum bicolor
SE2851206
PIF/harbinger
To2
chromosome_10:21929496-21929732
TTA
AGGCCTTGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT            -------C      - TA -------   CTAA   --- TTTTAAG  -  --  C   ACATCA ATCTTTAGACGCATGTATGAAGTATTAAATATAGACGAAAATAAAAACTAATTGCACA
  AGGCCTTGTTTA        TTCCAC C  A       AAC    AAT   T       AT TT  TC GTC      A                                                          
  ||||||||||||        |||||| |  |       |||    |||   |       || ||  || |||      |                                                           
  TCCGGAACAAAT        AGCGCT T  G       GAA    AGC   C       AA CA  AT TAA      T                                                          
AT            CTTTTTAA      G -- GCATCGT   ----   AAA -------  A  CC  -   ------ AACAGATTGATACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAGGCTGGTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851206

TTAGGCCTTGTTTACTTCCACCTAAAACCTAAAATTTTTTAAGATTTTCCGTCACATCAAATCTTTAGACGCATGTATGAAGTATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGGTCGGAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCCATAGTTAGACAATAATTACCACAAACAAACGAAAGTGCTACGGTGTCGCGAAATTTTTCTAAACAAGGCCTTA

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