Plant MITE

SE2811211

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10216
Sorghum bicolor
SE2811211
Tc1/Mariner
St9
chromosome_4:64848042-64848304
TA
TACTCCCTCCATCTCAAATTGTAAGTCATTTCAAGAATCTTGGAGAGTCAAAACATCTCAAGTTTGACCAAATTTGTATGATAGGACAATAA

Secondary structure and sequence

TSD TIR

5'

3'

              C                                     A               C   T     T  T    CA    ---CATTT   -   -- CAACCAAGTATCATTAGGTTCTTCA
TACTCCCTCCATCT AAATTGTAAGTCATTTCAAGAATCTTGGAGAGTCAAA CATCTCAAGTTTGAC AAA TTGTA GA AGGA  ATAA        ATG ATA  T                         
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| || ||||  ||||        ||| |||  |                          
ATGAGGGAGGTAGG TTTAACATTCAGTAAGGTTCTTAGAACCTCTCAGTTT GTAGAGTTCAAACTG TTT AATAT CT TTTT  TATT        CCG AGT  A                         
              A                                     C               A   T     -  T    TA    TCAAAACA   T   TT TCTATATGATACTTTTATATTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811211

TACTCCCTCCATCTCAAATTGTAAGTCATTTCAAGAATCTTGGAGAGTCAAAACATCTCAAGTTTGACCAAATTTGTATGATAGGACAATAACATTTATGATATCAACCAAGTATCATTAGGTTCTTCATTAATTATATTTTCATAGTATATCTATTTGATGCCACAAAACTTTATATTTTTTTCTATAATTTTAGTCAAACTTGAGATGCTTTGACTCTCCAAGATTCTTGGAATGACTTACAATTTAGGATGGAGGGAGTA

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