SE2851212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10217
  • Sorghum bicolor
  • SE2851212
  • PIF/harbinger
  • To3
  • chromosome_3:64433229-64433472
  • GTA
  • GGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA                CTAC    TTTTTTGGTTACTGTAGCACTTTCATTTGTATTTGGCAATTATTGTCCAACCATGGACTAACTAGATTTAAAAGATTCGTCTCACAAGTTACAGGT
   GGCCTTGTTTAGTTCC    GCTA                                                                                                
   ||||||||||||||||    ||||                                                                                                A
   CCGGAACAAATCAAGG    GGGT                                                                                                
ATG                ---T    TTTTGGTTTTTGAAAAGTTCTACGAGGTAGTGTAGCTTAGAATACCATGTACGTACCTCGTAATTTATATCTATTTTTTATTGATTAACGCGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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