SE2851213

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10218
  • Sorghum bicolor
  • SE2851213
  • PIF/harbinger
  • To28
  • chromosome_5:1837737-1838251
  • TTA
  • AGGGCCTGTTTGGTTCATGTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT    C           -A     GAGTA    A -   -  GTATCTCAGAGCCAGGCTTATATGGGACAGGCTGAGTATATGCAAGTAGTCGTGTTTGGTTGACTGTATCTACAAAGCCTGGCTGAGAAGAGATGTTGTTTGGTTGCCTACATGAAGATATGTTACATGAGATAAAAATATTATAAAATCATGATTATGATTTTTATTTTTTTACCGGTACACTCTTAAAGTTCTTATTTTATCTAATTATGTCTTAA
  AGGG CTGTTTGGTTC  TGTAT     AAGC T GGT TC                                                                                                                                                                                                                          
  |||| |||||||||||  |||||     |||| | ||| ||                                                                                                                                                                                                                           
  TCCC GACAAACCAAG  ACGTA     CCGA C TGG CC                                                                                                                                                                                                                          
AT    C           GA     ---GG    - T   T  GACTGGCCTACATCCCACCAGAACAAACTAATGAACAAACACCGAATCTCGGTCTGAGACGAGTACATTGTTCGTAGGGTGTCGGTCCGAGATCTTTTTGCGACCTTAGTCGGCAAAGACAACCCGGTCCGACCGGCCCACGTCGGTAAATCCTCTGATTACTACATAATCACATACTAATCATTTATCATTCACTATAATTATATAAAATTTCTACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End