SE2851218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10223
  • Sorghum bicolor
  • SE2851218
  • PIF/harbinger
  • To108
  • chromosome_6:14161670-14162270
  • TAA
  • AGAGCATCTCCAACGGTTTGTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TA             C      T  -TTCTA             -   A    G   AAA   AAAAATCACTCCTCCAACGGTTTTGCAAACGGGTTTGCCATTTTAGTAAACTTGGCATTTGAGAGACTCCCCTTGGCATATTTAGGAGTTGGCTTTTGGATTGGCAAACGCTTGCGGCCGGTTTTCCTGCATCAATTTCGTGCGCGGCCTGGTCTCTTTGGCACCGTTTTCTTCGTCGGAGCGAGTCCTCGCGCCAAATAGAGTCCGCGCCGCCATTGGTTTGCCGCGACTCAAAGACGC
  AGAGCATCTCCAA GGTTTG CA      GTTTGGCATTTGT GTT TTTG CAA   GGT                                                                                                                                                                                                                                                
  ||||||||||||| |||||| ||      ||||||||||||| ||| |||| |||   |||                                                                                                                                                                                                                                                 
  TCTCGTGGAGGTT CCAAAC GT      CAGACCGTAAACA CAA AAAC GTT   GAG                                                                                                                                                                                                                                                
AA             A      C  TAAAAC             A   C    G   ---   GGTTAACGTTTACGTTTCCTTTTTTATACCAGTAGGGATTACCAAACCGTAAAACCTGAACCGTTAATGGATCACCTGGGTCGGTTTAGAAACGCGCGCAGAAAGACAGCGTGCGCGCACAAAGGGAAGCGCGCTTCCCTCCGTGGCGGCGAGCGTCAGCGTCCAAGCACAGGCAGCAGCGGAAGTAGAAGGAGCACTACGTATGGCAAGGATCGCTTCCCTCCCTGCTGCATCGTCTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End