SE2851220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10225
  • Sorghum bicolor
  • SE2851220
  • PIF/harbinger
  • To4
  • chromosome_5:50513886-50514137
  • TTA
  • AGGCCTTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT           --------------AGTTCACCCC   A     -   ACTTTTTTAAGATTCCTCATCACATCAAATCTTATGATACATGCATGGAGCACTAAATATAGACGAAAACAAAAACTAATTACA
  AGGCCTTGTTT                        GAA TTTAA AAA                                                                                    
  |||||||||||                        ||| ||||| |||                                                                                     
  TCCGGAACAAA                        ACT GTGAC TCG                                                                                    
AT           ATGAACACTTTTCTAAAACCTAAA   -     A   TGAAAACAAACATAAACTATTAATAACAGGTTGATATTTGATTGATCCAAGTTTTCTAAGCAGAGCATTTAATGTCTGTTTGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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