SE2821222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10227
  • Sorghum bicolor
  • SE2821222
  • Mutator
  • M18
  • chromosome_3:61974799-61975581
  • TACCATTAA
  • AGAGTAAATTGCACGGCCGGTCCTTAAAGTATTATGTGGTTTTCATCTAGGTCCCCAAACTATGGAATCGCTCGTCTGACTTCCTAATGTATTTAGGTGATCTCATCTAGGTCCCCAAACTACGAAATCGTACGTCTGACTCCCTAATGTATTTAAGTGATCTCATATAGGTCCAAAATACACATAAGGAGGGTTAGAAAGCTACATGATCATCCACATGGATATGATTTAAGCACATGATCTCTGATTTAAGTCCACGGGTGCAGCCGCTGGCTCGTCCCTGCTCTCCATCACAGCACCCACGGCATACGATCTGCTCATGTAGACGGCAATGGCGGCTGGTCACACGAGTGAGCG

Secondary structure and sequence

TSD    TIR
5'



3'
TACCATTA                 C   C                        C                        T   C                                                                                                        C    A              G  -     A          G                                     C G    A                     T          A  C               C        A                 C    GAG      --CAACACC     ACCGCAAACCAAG
        AGAGTAAATTGCACGGC GGT CTTAAAGTATTATGTGGTTTTCAT TAGGTCCCCAAACTATGGAATCGC CGT TGACTTCCTAATGTATTTAGGTGATCTCATCTAGGTCCCCAAACTACGAAATCGTACGTCTGACTCCCTAATGTATTTAAGTGATCTCATATAGGTCCAAAATA ACAT AGGAGGGTTAGAAA CT ACATG TCATCCACAT GATATGATTTAAGCACATGATCTCTGATTTAAGTCCA G GTGC GCCGCTGGCTCGTCCCTGCTC CCATCACAGC CC ACGGCATACGATCTG TCATGTAG CGGCAATGGCGGCTGGT ACAC   TGAGCG         GGATA             
        ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||| ||||||||||||||||| ||||   ||||||         |||||             C
        TCTCATTTAATGTGCCG CCA GAATTTCATAATGCATCAAAAGTA ATCCAGGGGTTTGATGCTTTAGCG GCA ACTGAGGGATTACATAAATTCACTAGAGTAGATCCAGGGGTTTGATGCTTTAGCGTGCAGACTGAGGGATTACATAAATTCATTAGAGTATATCCAGGTTTTAT TGTA TCCTCCCAATCTTT GA TGTAC AGTAGGTGTA CTATACTAAATTCGTGTACTGGGGACTAAATTCGGGT C CACG CGGCGACCGAGCAGGGACGAG GGTAGTGTCG GG TGTCGTATGCTGGAC AGTATATC GTCGTTACCGCCGGCCA TGTG   GCTCGC         TCTAT             
AATTACCA                 A   T                        A                        T   A                                                                                                        A    C              -  C     C          A                                     A A    C                     T          C  C               C        C                 A    ATA      CCCATTCCA     ACCCTCTTCTCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End