SE2851223

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10228
  • Sorghum bicolor
  • SE2851223
  • PIF/harbinger
  • To12
  • chromosome_2:75910231-75910468
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAATTTTGGGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G     --             GGGTA    AG   TT   TTTG         -AATA   ----------------TCCAAT  T               AAAAGATTCATCTCG
  AGGCCTTGTTTAGTT GCAAA  ATTTTGGGATTTT     CTGT  CAC  TCG    TTTGTGGTA     TTG                      CA AAACTAATTAGGGTC               
  ||||||||||||||| |||||  |||||||||||||     ||||  |||  |||    |||||||||     |||                      || |||||||||||||||                
  TCCGGAACAAATCAA CGTTT  TAAAGTTCTAAGG     GGCA  GTG  AGC    GAACGCCGT     AAC                      GT TTTGATTAATGTGTC               
AA               G     TT             -----    --   -T   -TTA         GTACG   CTCATAATTTAAATCTGCTTTT  T               AAACGGACATTTAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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