Plant MITE

SE2851224

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10229
Sorghum bicolor
SE2851224
PIF/harbinger
To4
chromosome_6:42492762-42493234
TTA
AGGCCTTGTTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

TT   C          --      AACTGAAAAGTTTTCGGAAACCGTAGCACTTTCGTTTGTTTGTGGTAAATATTATTCAGTCATAGACTAACTAAGATCAAAAGATTCGTCTCGCGATTTACAGTCAAACTGTATAATTAGTTTTTATTTTTGTCTATATTTAATGCTTTATATATGTGCCGCAAGATTCGATGTGACAGGAAATCTTGAAAACTTTTTGGATTTCGGGGTGAA
  AGG CTTGTTTAGT  TCCGAA                                                                                                                                                                                                                     
  ||| ||||||||||  ||||||                                                                                                                                                                                                                     C
  TCC GAACAAATCA  CGTTTT                                                                                                                                                                                                                     
AT   A          AA      AAAAAACAAAAACCGATAACATCGTAAAGCAAAAATAAACTATTTGTAACAGGTTAATGCCTCATTGATCCGAGTTTTCTAAGTAGAGTGTTTAATGTCCATTTGACATGCCAATCAAAAATAAAAACAGATATAAATTATGAGATACATACGCTGATTTCTAAGCTACACTGCCTTTTAGAATTTTTTAAAATGTTTGATACCGGAACAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851224

TTAGGCCTTGTTTAGTTCCGAAAACTGAAAAGTTTTCGGAAACCGTAGCACTTTCGTTTGTTTGTGGTAAATATTATTCAGTCATAGACTAACTAAGATCAAAAGATTCGTCTCGCGATTTACAGTCAAACTGTATAATTAGTTTTTATTTTTGTCTATATTTAATGCTTTATATATGTGCCGCAAGATTCGATGTGACAGGAAATCTTGAAAACTTTTTGGATTTCGGGGTGAACTAAACAAGGCCATAGTTTGTAAAATTTTTTAAGATTTTCCGTCACATCGAATCTTTAGTCGCATACATAGAGTATTAAATATAGACAAAAATAAAAACTAACCGTACAGTTTACCTGTAATTTGTGAGATGAATCTTTTGAGCCTAGTTACTCCGTAATTGGACAATGTTTATCAAATAAAAACGAAATGCTACAATAGCCAAAAACAAAAAATTTTGCAAACTAAACAAGACCTTA

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