SE2851227

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10232
  • Sorghum bicolor
  • SE2851227
  • PIF/harbinger
  • To15
  • chromosome_4:7500184-7500801
  • TTA
  • AGAGCATCTCCAACAGTTATGCAATTAGAATTTGCCATTTGTTGGAATTTGTCAAGTCTCTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                          A  ATT   C    GTT             -T  C    CGTT    CAAAAGAAAAATAAGTCCA       GT  -      TTTTTGACTTGGCATTTCCCAAAATAGTGGACCCAACTATTTTTGTTAGGGATCTTTTTTTTTGTTTGGCGCGCTTCGCGCGAGATTTTTTCTCTGCGCGGGAATTTCTGTCGCCCGTCGCCGCTAGTCCACGAAGTCGCAAGTCACCACCATTTCTGTGAATCGCGGCCTAGTTGCGCAGCGATGGATCGTATCTCCTAGGTGCGCGC
  AGAGCATCTCCAACAGTTATGCAATT GA   TGC ATTT   GGAATTTGTCAAG  CT TAAA    TTGC                   TCTCCAA  GT TTGGCA                                                                                                                                                                                                                 
  |||||||||||||||||||||||||| ||   ||| ||||   |||||||||||||  || ||||    ||||                   |||||||  || ||||||                                                                                                                                                                                                                 G
  TCTCGTAGAGGTTGTCAATATGTTAA CT   ATG TAAG   CTTTAAATAGTTT  GG ATTT    AACG                   AGAGGTT  CA TACGTA                                                                                                                                                                                                                 
AT                          C  GAT   -    -AT             TT  A    --TT    -------------------       GT  A      AACTGAATACGTAAAACCGTTTGAACCGTAAACTACCTGGTTTGAACCATAAAAACGTATTCGTGTTACCGAACCGTTAAAACTATAGGGCTCAAAGGATCTGAGGAACAGCACGCACTGGAGGGGTGTGCAACGCCATCAAAGGGCGCTCCTGAGGAGGAGGGGCGCGCTTGAGAAGAAAGGGGCGCGGCGACGGAGGAAAGAAAGGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End