SE2851230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10235
  • Sorghum bicolor
  • SE2851230
  • PIF/harbinger
  • To4
  • chromosome_10:18198471-18198721
  • TAA
  • AGGCCTTGTTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA           T   ----   C       -   GTTCTTTTGGGTACTGTAGCACTTTCGTTTGTATTTGGCAATTGTTGTCCAACCATGGACTAACTAGGCTCAAATGATTCGTCTCGCAAATTA
  AGGCCTTGTTT AGT    TCC TGGGTGA AAA                                                                                             
  ||||||||||| |||    ||| ||||||| |||                                                                                              
  TCCGGAACAAA TCA    AGG CTTTAGG TTT                                                                                             
AA           -   ATGT   -       T   TGAAAAGTTCTAAGGGGTAGTGTAGCTTAGAACGCTGTGTACGTACCTCGTAATTTATATCTATTTTTTTATTTATTAACGTGTTAAACGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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