SE2831231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10236
  • Sorghum bicolor
  • SE2831231
  • hAT
  • Hat83
  • chromosome_4:64865719-64866257
  • GCCCCGCC
  • GCCCCGCCTCGCCCTGGGC

Secondary structure and sequence

TSD    TIR
5'



3'
   CCC  C           --------  -    -         C AATTCGGTTCGGTTCGGTTAGAAATATTTCGGTTTCTAACAAATAAGCACCGATCGGTTATTCAAAAAATGAAAACTGCAGAATTTCGGTTCGGTTTGTAAATTCGGTTTTCGGTTTTTAACCGCAATAACCGAACATAATGGCATCAGCATATTCAAACAACAGAAGATTGCAAGCAACAACATATTAAAACAATATCTTAACATGAAAATTTAAAAGTAGTGCATCT
 GC   GC TCGCCCTGGGC        GT TCGG TTATAACCG A                                                                                                                                                                                                                                     
 ||   || |||||||||||        || |||| ||||||||| |                                                                                                                                                                                                                                      
 CG   CG AGTGGGACCCG        GG CGTT GGCTTGGCT T                                                                                                                                                                                                                                     
C  CCC  -           TGAAAAAT  A    T         - TAACGCCAAATAAGCCAAAAGCCAACGCCCAAGCCAATACCAAAAACACCATAAGCCACAAGCCGGAGCCGAAGCTAAAATATGACTTTGGCTTGGCTTATTGGCTTATTTGGCTTTATGGGAGAAAGTGAGGAAGTAGCGTCCAATAAATGACAAAGTTATTACTTCTTGAAAACTTTGATACAAACGACGGAACAACTAAACACATGATACTCTTACACTCTATGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End