SE2851235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10240
  • Sorghum bicolor
  • SE2851235
  • PIF/harbinger
  • To14
  • chromosome_10:19326182-19326430
  • TAA
  • AGGCCTTGTTTAGTTCCAAATTTTTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -   TTT     C     AGAAATAG   C      --      ATTTGACAAATATTGTCCGATCATGGACTAACTAGGCTCAAAAGATTTGTCTCGCAAATTACAGA
  AGGCCTTGTTTAGTTCC AAA   TTTTG AAAAT        TAG ATTTTC  GTTTGT                                                                 
  ||||||||||||||||| |||   ||||| |||||        ||| ||||||  ||||||                                                                 T
  TCCGGAACAAATCAAGG TTT   AAAAC TTTTA        ATC TAAAGG  AGTGTA                                                                 
AA                 G   TAT     A     ----AAGA   -      GT      TATTAGAACGCCGTGTATGTACTTAGTGATTTATATCTATTTTCTTTATTGATTAATGTGTCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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