SE2831237

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10242
  • Sorghum bicolor
  • SE2831237
  • hAT
  • Hat84
  • chromosome_10:6010629-6011154
  • GGTAAAAC
  • CTATAGATGGCAACG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTAAAA   T         C AGCACATTACCC       ------ AAAATATATA   CCGCACTCGCGGGTTGAATTTCAAACCCGCACCCGCATCCGCAACCCGCCACGGGTAGAAGTCTACACCCACGCCCATACCCGCGGGCACAAAATACCCGCGAGCGTACCCATAAAACCGTATAATAATAAATCAATAATACATGCATAGATTATAGAAAAGAGTTTAAGTATGAAAATCAAAACTACCTAGCATTATACCAACATAAAAATAGTT
       CTA AGATGGCAA G            GCGGGTG      C          GAC                                                                                                                                                                                                                        
       ||| ||||||||| |            |||||||      |          |||                                                                                                                                                                                                                         
       GAT TCTGCCGTT C            GGGCGCT      T          GGG                                                                                                                                                                                                                        
CAAAATG   T         A ------------       CATTTT ----------   CCATCCCACTCCCATGCCCATGTTGAAACACGGGCGCCCACGTCCACGCCCAAATATCAACTTGGGTTGCCCATTTTAGAACACCCGTATCTTTTGAACATGGGCACGGGCGTTTGGGCGAGTTGGAGTATTATGCATCCAGAGAAGAATATGATATATATTTCTTTCGTTGTATCAAAATATTAAAAGAGGGAGTATAGATAAATATATATTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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