Plant MITE

SE2851241

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10246
Sorghum bicolor
SE2851241
PIF/harbinger
To110
chromosome_4:51539781-51540147
TTA
AGAGCATCTCCAGCAGTGCTACCTAAATCAGC

Secondary structure and sequence

TSD TIR

5'

3'

TT                T           CA  -----AGA    CTAAATGTTTATTTAGGTAGCCACCCATTTTAATACTACCTAGATTTTGCTCTTAACTCCAGCAGTATTAACTAAAACTAGCTACCCATTTTTATCTTAGCAAAGGATGACTTCTAGGTCCCACAATCAGAGCATGAATG
  AGAGCATCTCCAGCAG GCTACCTAAAT  GC        CTAC                                                                                                                                            
  |||||||||||||||| |||||||||||  ||        ||||                                                                                                                                            G
  TCTCGTAGAGGTCGTC CGATGGATTTA  TG        GAGT                                                                                                                                            
AT                -           CC  ATAGATAG    TAGACTCATCATCTCCCGATTTTTAAGTGAGATCGTCTGATGGATAAGGTGGGTATGGGTTTAAGGGGAGAGGTGATGGGTAAGGACAACCCAGTTCCTGTGATGGGTTTAGAAGAGAGGGTGAGTGCGCGGAGAGAGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851241

TTAGAGCATCTCCAGCAGTGCTACCTAAATCAGCAGACTACCTAAATGTTTATTTAGGTAGCCACCCATTTTAATACTACCTAGATTTTGCTCTTAACTCCAGCAGTATTAACTAAAACTAGCTACCCATTTTTATCTTAGCAAAGGATGACTTCTAGGTCCCACAATCAGAGCATGAATGGGAGAGAGAGGCGCGTGAGTGGGAGAGAAGATTTGGGTAGTGTCCTTGACCCAACAGGAATGGGTAGTGGAGAGGGGAATTTGGGTATGGGTGGAATAGGTAGTCTGCTAGAGTGAATTTTTAGCCCTCTACTACTCAGATTGAGGATAGATAGTCCATTTAGGTAGCCTGCTGGAGATGCTCTTA

Copy Cancel