SE2811243

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10248
  • Sorghum bicolor
  • SE2811243
  • Tc1/Mariner
  • St2
  • chromosome_1:42687874-42688137
  • TA
  • TACTCCCTACATGTTCCTAAAGAAAGTCTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
        A   G       A      CT     AGAT     -- A      ACATTTTAAACTTTGACTAGAGATAAACTCTTTTGAGTTGAATTTAAAAATATAAAAGTGATGTAAGTATATTCATTTTGAA
TACTCCCT CAT TTCCTAA GAAAGT  TTTTG    TGTCT  T AGTCAA                                                                                  
|||||||| ||| ||||||| ||||||  |||||    |||||  | ||||||                                                                                  A
ATGAGGGA GTA AGGGATT CTTTTA  AAAAC    TGTAG  G TGTTAG                                                                                  
        G   -       A      CC     ---C     TT -      AGATTTTTGTTGACACTTACGATGAAAAACTATATAGTTTATAAATATTTTATATCAGTTATATATGAAAATATTCTGATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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