SE2851244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10249
  • Sorghum bicolor
  • SE2851244
  • PIF/harbinger
  • To36
  • chromosome_1:72891481-72892180
  • TTA
  • AGGCCCTGTTTAGTTCCCCACCTAAAAATTTTTCATCCATCCCATCGAATCTTTGGACACATGCATGGAACATTAAATATA

Secondary structure and sequence

TSD    TIR
5'



3'
TT     C            CAC                    C        C                  AC          GATA                        TA           CA                        C                                 C     C      CA         T                  GA       T      C         T        -      -   TAAAA      C       A   CC  C    C           C     AA         -   A        -    CT
  AGGCC TGTTTAGTTCCC   CTAAAAATTTTTCATCCATC CATCGAAT TTTGGACACATGCATGGA  ATTAAATATA    AAAAAATAAACTAATTACACAGTT  GTTGAGAATCG  AGACGAATCTTTTAAGCCTAGTTA TCTATGATTAGCCTTAAGTGCTACAGTAACCCA ATATG TAATGA  GATTAGTTA GCTTAATAAATTTGTCTT  AGTTTCC GACGAG TATGTAATT GTTTTTTT ATTAGT TTC     ACCCCT CCGACAT CTT  GA ACAT CGATGTGACAC CAAAA  TTTTCGTTC CCA TTTAAACA GGCC  
  ||||| ||||||||||||   |||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||||    ||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||||||  ||||||| |||||| ||||||||| |||||||| |||||| |||     |||||| ||||||| |||  || |||| ||||||||||| |||||  ||||||||| ||| |||||||| ||||   
  TCCGG ACAAATCAAGGG   GGTTTTTGAAAAGTGGGTAG GTAGCTTA AAATCTGTGTACGTACTT  TAATTTATAT    TTTTTTATTTGATTAATGTGTCAA  CAACTTTTAGT  TCTGCTTAGAAAATTCGGATCAAT AGATATTAATTGGAATTCACGATGTCATTGGGT TATAT ATTACT  CTAATTAAT CGAATTATTTAAGCAGAG  TCAAAGG CTGCTC ATACATTAA CAAAAAAA TAATCA AAG     TGGGGA GGCTGTA GGA  TT TGTA GCTACACTGTG GTTTT  AAAAGTGGG GGT AGATTTGT CCGG  
AT     A            TAT                    T        C                  CA          -ATA                        TC           AC                        C                                 A     T      AC         C                  TG       T      A         T        A      T   -CTTA      A       -   TA  T    A           A     AA         A   -        T    AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End