SE2851248

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10253
  • Sorghum bicolor
  • SE2851248
  • PIF/harbinger
  • To4
  • chromosome_1:59144716-59144953
  • TTA
  • AGGCCTTGTTTAGTTCGCAAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      T    -   TTTTG  TACTGTATCACCTTTGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTA
  AGGCCTTGTTTAGTTCGCAAAA TTTT GGT     AC                                                                                  
  |||||||||||||||||||||| |||| |||     ||                                                                                   
  TCCGGAACAAATCAAGCGTTTT AAAA TTC     TA                                                                                  
AT                      T    G   -----  AAAGGCAGTGTAGTTTAGAAACCAGCGTACGTACCTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAATGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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