SE2851252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10257
  • Sorghum bicolor
  • SE2851252
  • PIF/harbinger
  • To18
  • chromosome_10:54538501-54538741
  • TTA
  • AGGCCTTGTTTAGTTTCACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 -A   --------------    TCCAAAAACTTTTCAAGATTTTCCGTCACATCGAATCTTGCGGCAAAAGCATTAAATATAGATAAAAAAGTAACTAACTGCAAAGT
  AGGCCTTGTTTAGTTTC  CCC              AAAA                                                                                      
  |||||||||||||||||  |||              ||||                                                                                       
  TCCGGAACAAATCAAAG  GGG              CATG                                                                                      
AT                 GA   ACTTTTCAAAAACC    ATATCGTGAAAGCAAATATAAACTGTTAATAACAGGTTAATTCCGGATTGATCCGAGTTTTCTAAGTAGAGCGTTTAATGTCTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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