SE2851254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10259
  • Sorghum bicolor
  • SE2851254
  • PIF/harbinger
  • To1
  • chromosome_7:55723436-55723684
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTCACCCCCAA     AAAA   TTCAAGATTTCCCGTCACATCGAATCTTGCGGCACATGCATGGAGCATTAAATGTAGATAAAAACAAAAACTAATTACACAGTTTGCCTGTAAA
  AGGCCTTGTTTAG           AACCA    CTT                                                                                              
  |||||||||||||           |||||    |||                                                                                               
  TTCGGAACAAATC           TAGGT    TTT                                                                                              
AA             -----------     ----   TCAAAAACCTAAAACTGTGATATTGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGGTCCGAATTTTCTAAGCAGAGCGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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