SE2851260

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10265
  • Sorghum bicolor
  • SE2851260
  • PIF/harbinger
  • To112
  • chromosome_2:2909538-2909920
  • AAA
  • GGGCGTGTTTGTTTGCCTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAA                    ACGAGG     GGCCTGGCTGTGAGGTGGAGATGTTTGTTTACCTGGACTTGTTTTGGGCCTGGCCAGCACGATGATTAAAGCACCCACCAGCCAGGCCCGGCAGTGAAGGCCACTCCCACCGTTTCTGGCGAGCCAGGCCGAACGTGTGCAGGCATGGGCTTCATTT
   GGGCGTGTTTGTTTGCCTGG      GGTTG                                                                                                                                                             
   ||||||||||||||||||||      |||||                                                                                                                                                             G
   CCCGCACAAACAAACGGACC      GGTCG                                                                                                                                                             
AAA                    CGGAAG     GTCCGGCCAAGGGGAGCCGGTCCAGGATTTACCGGTCCGGGTCTACCACGTCACGTGGACCAAACCAACGTGAAGAGTCAACTCGGACCGATCTAACTCGACCACGAACAAACGGACGTATCCCACCGTCATATCGTTTGATGGAAGATTGGTCGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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