Plant MITE

SE2831263

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10268
Sorghum bicolor
SE2831263
hAT
Hat2
chromosome_9:52020487-52020666
TACAAACA
ATAAGGATGGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TACAAAC             CAGTG   C   C                     T      CTA      CT     AAAAAAAAAT  G  AAG
       ATAAGGATGGGGA     CTC AAA GGGTACCCGCGGTTCTTCTCT GTGTAA   AATGAA  AAATG          GA AA   
       |||||||||||||     ||| ||| ||||||||||||||||||||| ||||||   ||||||  |||||          || ||    
       TATTCCTACCCCT     GAG TTT CCTATGGGCGCCAAGAAGAGA CACATT   TTACTT  TTTAT          CT TT   
ACAAACA             ACTGA   A   A                     T      AAA      AT     ----------  G  AAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831263

TACAAACATAAGGATGGGGACAGTGCTCCAAACGGGTACCCGCGGTTCTTCTCTTGTGTAACTAAATGAACTAAATGAAAAAAAAATGAGAAAAGGAATTGTCTATTTTATTCATTAAATTACACTAGAGAAGAACCGCGGGTATCCATTTAGAGAGTCATCCCCATCCTTATACAAACA

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