SE2831268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10273
  • Sorghum bicolor
  • SE2831268
  • hAT
  • Hat17
  • chromosome_10:54813726-54813994
  • GTCACTCC
  • CTAAGGATGAAAACGGAACGGAAATATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCACTC                AA        T  ------------------------C   CCGACCGCTTTCGTTTTCTACATTATCGTTTTCTATATTATGAAACTGTTTTCGAATTTTATCAAACATAAAAATTTGTCAGT
       CTAAGGATGAAAACGG  CGGAAATA TC                         GTA                                                                                   
       ||||||||||||||||  |||||||| ||                         |||                                                                                    
       GATTCCTACTTTTGCC  GCCTTTGT AG                         GCT                                                                                   
CCTCACT                -A        C  CTTTTGCCTTAATGTTACATCTTTT   TTTGCCAGCCATGCCTTATAAAGATATAAAATCGTTAATTTCTCATGTTTTTTTCTTATTTTTACCAACACTTTGGTTGACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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