SE2851272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10277
  • Sorghum bicolor
  • SE2851272
  • PIF/harbinger
  • To1
  • chromosome_4:63437760-63438005
  • TTA
  • AGGCCTTGTTTAGTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 CCCCAAAAACCA    CT   CAA      ----    CA   -------CGA     ----- CG  AT    ATTAAGTATTAAATATAGACAAAAACAAAAACTAATTGCACAGTTTG
  AGGCCTTGTTTAGTTCA            AAAA  TTT   GATTTC    CTGT  CAT          ATCTT     G  GC  ATGC                                               
  |||||||||||||||||            ||||  |||   ||||||    ||||  |||          |||||     |  ||  ||||                                                
  TCCGGAACAAATCAAGT            TTTT  AAA   CTAAAG    GACA  GTA          AAACT     T  AA  CAGG                                               
AT                 ------------    TT   --C      CCAT    TC   AAGTAAAAAT     GTTTG --  --    TTAGTACCTGATTGATCCGAGTTTTCTAAGTAGAGCACGAAATGTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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