Plant MITE

SE2811274

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10279
Sorghum bicolor
SE2811274
Tc1/Mariner
St20
chromosome_3:42498965-42499140
TA
TACTCCCTCCGTCCCAGTATATAAGGCGCAACTAC

Secondary structure and sequence

TSD TIR

5'

3'

              C             C      -------C  - -   TCAAAGACCAAGAACGCATTTAATTCTCTCTCAGCACTAGT
TACTCCCTCCGTCC AGTATATAAGGCG AACTAC        TC T GGT                                         
|||||||||||||| ||||||||||||| ||||||        || | |||                                         A
ATGAGGGAGGCAGG TCATATATTCCGC TTGGTG        GT C GGA                                         
              A             A      AAAAATAA  A A   TATTATATTCCGCACGAGAGAGTGTTTGTAATTACATCATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811274

TACTCCCTCCGTCCCAGTATATAAGGCGCAACTACCTCTGGTTCAAAGACCAAGAACGCATTTAATTCTCTCTCAGCACTAGTACTACTACATTAATGTTTGTGAGAGAGCACGCCTTATATTATAGGACATGAATAAAAAGTGGTTACGCCTTATATACTAGGACGGAGGGAGTA

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