SE2851280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10285
  • Sorghum bicolor
  • SE2851280
  • PIF/harbinger
  • To3
  • super_2489:2435-2682
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             -    -----    AGTTTTTGGATTTTAACATGGTAGTATTTTCGTTTTTATTTGACAAACATTATCTAATCATGAAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTTA
  AGGCCTTGTTTAG ATCC     GAAA                                                                                                  
  ||||||||||||| ||||     ||||                                                                                                   
  TCCGGAACAAATC AGTG     TTGG                                                                                                  
AA             A    GGTTT    TTTTTGAAAAATTCTAAGAAGCAGTGTAGCTTAGAACGCAATATACATACCTTGTAATTTATATCTGCTTTTGTTTTTGATTAACGTGTCAAATGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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