SE2851283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10288
  • Sorghum bicolor
  • SE2851283
  • PIF/harbinger
  • To2
  • chromosome_7:53457420-53457657
  • TAA
  • AGGCCTTGTTTAGTTTCCAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C A        C   ATTCCCCGTCACATCGAATCTTTAAACGTATGCATGAAACATTAAATATAAATAAAAATAAAAACTAATTGCACAGTTTGCCTGTA
  AGGCCTTGTTTAGTTT C AAAATTTT AAG                                                                                      
  |||||||||||||||| | |||||||| |||                                                                                       
  TCCGGAACAAATCAAA G TTTTAAAA CGG                                                                                      
AA                C C        A   AAACCGATGACATCGTGAAAGCAAACATAAACTTTTTATAATAGATTAATACCTGATTGATCCGAGTTTTCTAAGTAGAGCATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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