Plant MITE

SE2811285

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10290
Sorghum bicolor
SE2811285
Tc1/Mariner
St10
chromosome_8:52476720-52476979
TA
TACTCTCTCCGTCCCAAAAAACATGTAAATCTCGATTCCCGAGGAGTCAAAGATTCTTAACTTTGACT

Secondary structure and sequence

TSD TIR

5'

3'

            CCC                                      T    -  C       AAATACAAATAAAA      CGATGTTTATGATGTGTAATGAGTATAGTTAGATTAGTTATTAAATA
TACTCTCTCCGT   AAAAAACATGTAAATCTCGATTCCCGAGGAGTCAAAGA TCTT AA TTTGACT              ATATAT                                               
||||||||||||   |||||||||||||||||||||||||||||||||||||| |||| || |||||||              ||||||                                                
ATGAGAGAGGCA   TTTTTTGTGCATTTAGAGCTAAGGGCTCCTCAGTTTCT AGAA TT AAACTGG              ATATTT                                               
            --T                                      T    A  T       ---------ATCAA      AGAATAACAAATGTAAACTTAGAGATTAATCCAAGCAATACTTTGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811285

TACTCTCTCCGTCCCAAAAAACATGTAAATCTCGATTCCCGAGGAGTCAAAGATTCTTAACTTTGACTAAATACAAATAAAAATATATCGATGTTTATGATGTGTAATGAGTATAGTTAGATTAGTTATTAAATATAGTTTCATAACGAACCTAATTAGAGATTCAAATGTAAACAATAAGATTTATAAACTAGGTCAAATTTAAAGATTCTTTGACTCCTCGGGAATCGAGATTTACGTGTTTTTTTACGGAGAGAGTA

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