Plant MITE

SE2821288

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10293
Sorghum bicolor
SE2821288
Mutator
M19
chromosome_1:12937208-12937382
AGTTAAAAT
TTAAAATGGGCTTTTTAGTTATTTGCCAC

Secondary structure and sequence

TSD TIR

5'

3'

 AG    AA    C      G           CA  A     -- CCTTATGGTGCGTTCTTGCAGATTTGCCATTCCTGACCCACATGTC
   TTAA  TGGG TTTTTA TTATTTGCCAC  AC TGCCA  T                                              
   ||||  |||| |||||| |||||||||||  || |||||  |                                               
   AATT  ACCT AAAAAT AATAAACGGTG  AG AATTC  A                                              
TAA    -G    A      A           --  -     AC CGGTTGGGACATACACAGTTACTGTACACCCTGGTATACTCAGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2821288

AGTTAAAATGGGCTTTTTAGTTATTTGCCACCAACATGCCATCCTTATGGTGCGTTCTTGCAGATTTGCCATTCCTGACCCACATGTCAGTGACTCATATGGTCCCACATGTCATTGACACATACAGGGTTGGCACACTTAAGAGTGGCAAATAAATAAAAAATCCAGTTAAAAT

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