Plant MITE

SE2851292

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10297
Sorghum bicolor
SE2851292
PIF/harbinger
To4
chromosome_2:13560893-13561141
TAA
AGGCCTTGTTTAGATATGAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA             -A   ---      ATTCT       ---     TGT -   CTTTCGTTTGTTTGTAGTAAATATTGTCCAATCATGGACTAACTGGGATCAAAAGATTCGTCTCGCGATTTAC
  AGGCCTTGTTTAG  TAT   GAAAAT     GGATTTC   GCTAC   A GCA                                                                         
  |||||||||||||  |||   ||||||     |||||||   |||||   | |||                                                                          
  TCCGGAACAAATC  GTG   TTTTTA     TCTAAAG   TAAAA   G CAG                                                                         
AA             AA   GGG      GTTTT       TTC     --- A   TGTAGCTTAGAAAGCCGTGTACGTACTTTGTAATTTATATCTGCTTTTATTTTTGATTAACATGTCAAATTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851292

TAAGGCCTTGTTTAGATATGAAAATATTCTGGATTTCGCTACTGTAGCACTTTCGTTTGTTTGTAGTAAATATTGTCCAATCATGGACTAACTGGGATCAAAAGATTCGTCTCGCGATTTACAGTTAAACTGTACAATTAGTTTTTATTTTCGTCTATATTTAATGTTTCATGCATGTGCCGAAAGATTCGATGTGACAGAAAATCTTGAAATCTTTTTGATTTTTGGGGTGAACTAAACAAGGCCTAA

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