SE2831294

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10299
  • Sorghum bicolor
  • SE2831294
  • hAT
  • Hat16
  • chromosome_3:15641593-15642135
  • CCCACCAC
  • TATAGATGGCCATCGGGCCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCACCAC             -   G        ----   C --     -  GT      CCGTGCTTGCCCCGGGCCGCGCCGTGCCGTCGTGCCGTCGGGCCGTGCCATCACCGTGCCTCGTGCCGGGGCTATGGCCCAAGGCACGGCCCGCGGGCCGTCGGGCCGGCCCGAAGGCACAGCGGGCCACCGGGCCAAGGTCGCGCCAGGCCAGTAGCAGACCTATATTTTCTTTTTTTATTTAGAATTAGCAAGCTATATTTCTTAACAGGCCAA
        TATAGATGGCCAT CGG CCGTGCTG    GCC G  GCGTG CC  GTCGTG                                                                                                                                                                                                                        
        ||||||||||||| ||| ||||||||    ||| |  ||||| ||  ||||||                                                                                                                                                                                                                         
        ATATCTACCGGTA GTC GGCACCGG    CCG G  CGGGC CC  GGGCCG                                                                                                                                                                                                                        
CACCACCC             C   G        GCAA   - GC     G  --      TAAAACCGGTCCGGGCCCGTGCCGTGCCGTGCTGTTGATGGCCCGGGCCCGGCCGTGCCGGGCTCCGTGGCCCGGCACGGACCCGGCGGTAGCACCGGGCACCGTGCCGAGTCCGTGCCGGGCTGCCGGGCTACAAATTACAGGGTCATTTTTTATATGGAAAATTAAGATTTTTTTTTCTTTTATATCCAGACAACCGAGTAGGTAGGTAGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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