Plant MITE

SE2811301

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10306
Sorghum bicolor
SE2811301
Tc1/Mariner
St20
chromosome_6:1819207-1819384
TA
TACTCCCTCTGTCCTAGTATATAAGGCGTAACTAC

Secondary structure and sequence

TSD TIR

5'

3'

                                   CTCGG     AAGA  AAG    CATTTAATT           -  CT   A  A
TACTCCCTCTGTCCTAGTATATAAGGCGTAACTAC     GTTCA    CC   AATA         CTCTCTCACAG CA  AGT GT 
|||||||||||||||||||||||||||||||||||     |||||    ||   ||||         ||||||||||| ||  ||| || C
ATGAGGGAGGCAGGATCATATATTCCGCATTGGTG     CGAGT    GG   TTAT         GAGAGAGTGTT GT  TTA CG 
                                   AAAAA     -ACA  ATA    ATTCCGCAC           T  AT   -  T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811301

TACTCCCTCTGTCCTAGTATATAAGGCGTAACTACCTCGGGTTCAAAGACCAAGAATACATTTAATTCTCTCTCACAGCACTAGTAGTACTGCATTTATGTTTGTGAGAGAGCACGCCTTATATTATAGGACATGAGCAAAAAGTGGTTACGCCTTATATACTAGGACGGAGGGAGTA

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