SE2811302

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10307
  • Sorghum bicolor
  • SE2811302
  • Tc1/Mariner
  • St6
  • chromosome_7:35907827-35908087
  • TA
  • TACTCCCTCCGTCCACGAAAGAATCAATTCCTAAGATCCGTGCCAGTCAAACTTTTTAAAGTTTGACTAACTTTATAGAAAAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                      A      C   A  TCC  G  --                G         C   A           AACAACATC    A   A    ------------GCA       T   AAT
TACTCCCTCCGTCCACGAAAGA TCAATT CTA GA   GT CC  AGTCAAACTTTTTAAA TTTGACTAA TTT TAGAAAAGAGT         TATA TAT AAAT               CATTATA GAA   
|||||||||||||||||||||| |||||| ||| ||   || ||  |||||||||||||||| ||||||||| ||| |||||||||||         |||| ||| ||||               ||||||| |||    
ATGAGGGAGGCAGGTGCTTTCT AGTTAA GAT CT   CA GG  TCAGTTTGAAAAATTT AAACTGGTT AAA ATCTTTTTTTA         ATAT ATA TTTA               GTAGTAT CTT   
                      C      A   -  CAA  -  AT                G         T   G           CGATTCTAA    C   G    ATCATAATAATCTAA       -   ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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