SE2851308

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10313
  • Sorghum bicolor
  • SE2851308
  • PIF/harbinger
  • To115
  • chromosome_10:52854882-52855117
  • TAA
  • AGGGCGTCTCCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               ACCTTTTTGAA          ACCT     -    AAA     AAATAACAAAAAGTAGA       AAAGTATGTCAGTGAGTGAAATTTTCTTAAAAAACGTGC
  AGGGCGTCTCCAATG           TAGCTAGCTG    GGAGC CCGG   CAATT                 TAGTGGT                                       
  |||||||||||||||           ||||||||||    ||||| ||||   |||||                 |||||||                                        
  TCCCGCAGGGGTTGC           GTCGATCGAT    CCTTG GGTC   GTTAG                 CTTTGCT                                       
GA               -CACCATGTCA          -CCT     T    -GG     ------GTCTTCTTTCT       TCTTGAGTAGAGTGATCGCCGCTTGGTTCTCGAATCGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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