SE2851312

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10317
  • Sorghum bicolor
  • SE2851312
  • PIF/harbinger
  • To37
  • chromosome_5:4440197-4440445
  • ATA
  • GGCCTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA         -   - --  CCAA   ATTTTGCCAAAAATTTTAGATTCTTCGTCACATTAAATCTTGCGGCGCATGCATAGAGTATTAAATATAGATGAAAACAAAAACTAATTACATAGTTTA
   GGCCTTGTT GAG T  TT    AAA                                                                                                   
   ||||||||| ||| |  ||    |||                                                                                                   T
   CCGGAACAA TCA C  TT    TTA                                                                                                   
ATA         A   A CA  ----   AAACCCTAAAGCCGATGACATCATGAAGACAAACATAAACTGTTTATAACAGGTTAGTATCTGATTGATCCGAGTTTTTTAAACAGAGTGTTTAATGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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