Plant MITE

SE2831314

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10319
Sorghum bicolor
SE2831314
hAT
Hat16
chromosome_8:12939791-12940418
ATTGTCGT
GTTAAAGTTGAGCATGC

Secondary structure and sequence

TSD TIR

5'

3'

ATTGTC    A  T      T  A   CGCGGGCCAAAGGCACGGCCCAAAGCACGGTCATTTGGCCCGGCCCGAGCACGGCACGGCCCGATCCTAACTGGGCCCGGGCCGGCCCGAAGCACGTTGCGGGCCGTGCTTGGGCCGACCCCTCGGCCCGCTGCACGGCACGGCACGGCACGCTTTTAACAGCAGACACGGTGTCGGCACGGTATAATGAAATTTGTGAAACTTGAAGTATCAGGTTCTATGACTTGTGAAACTTGTGACTTTTGGCAAGTAAAATATGATCTGAGAGTATATTGTGTTATGTGAAT
      GTTA AG TGAGCA GC GCC                                                                                                                                                                                                                                                                                               
      |||| || |||||| || |||                                                                                                                                                                                                                                                                                               T
      TAAT TC ACTCGT TG CCG                                                                                                                                                                                                                                                                                               
TGCTGT    C  T      -  C   GCCGGGCCGTGCCAGGCCGTGCCCGGGCACGATCCGTGCCGGGCTTTCCCGTGCCCGGGCATACCGGGCGCACGGTGGCCCGGCACGGACGTGTCGGGTAGCACGGACGGACTGCCGGGTCCGTGCCGGGCACCCGGCTAAAAGCACGGCCCGGCCGGGCTTTCCGTGCTCCGGGTTATCACGAAGCCCGGCCGGGTACCGGGTTATATACTTTTTGTGGTTTAAATTATGTCTTAAATTGTTTCGTATTTATGTAATGTAAGTTCAGTGTATGTAATTATGAAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831314

ATTGTCGTTAAAGTTGAGCATGCAGCCCGCGGGCCAAAGGCACGGCCCAAAGCACGGTCATTTGGCCCGGCCCGAGCACGGCACGGCCCGATCCTAACTGGGCCCGGGCCGGCCCGAAGCACGTTGCGGGCCGTGCTTGGGCCGACCCCTCGGCCCGCTGCACGGCACGGCACGGCACGCTTTTAACAGCAGACACGGTGTCGGCACGGTATAATGAAATTTGTGAAACTTGAAGTATCAGGTTCTATGACTTGTGAAACTTGTGACTTTTGGCAAGTAAAATATGATCTGAGAGTATATTGTGTTATGTGAATTGTGAAGTATTAATGTATGTGACTTGAATGTAATGTATTTATGCTTTGTTAAATTCTGTATTAAATTTGGTGTTTTTCATATATTGGGCCATGGGCCGGCCCGAAGCACTATTGGGCCTCGTGCCTTTCGGGCCGGCCCGGCACGAAAATCGGCCCACGGGCCGTGCCTGGGCCGTCAGGCAGGCACGATGGGCTGTGCAGGCACGGCCCGGTGGCACGCGGGCCATACGGGCCCGTGCCCTTTCGGGCCGTGCCTAGCACGGGCCCGTGCCGGACCGTGCCGGGCCGGCCCGTTGCTCATCTCTAATTGTCGT

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