SE1820002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10330
  • Glycine max
  • SE1820002
  • Mutator
  • M2
  • Gm17:27123095-27123333
  • TAGGAATAA
  • AGAGCAAATTACAGCAACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGGAATA                     CCCCTA  C    ATCA         TAACCC       -      ATTTTTCTACAC     CCTC   --    GAAAACATTATACTAACACCCCAACA
        AGAGCAAATTACAGCAACACC      AG TTTT    AATTATACA      CATCCTT TTTTTT            TAACC    TAA  GTTT                          
        |||||||||||||||||||||      || ||||    |||||||||      ||||||| ||||||            |||||    |||  ||||                          A
        TCTCGTTTAATGTTGTTGTGG      TC AAAG    TTAATGTGT      GTAGGGA GAAAAA            ATTGG    TGA  GTGG                          
AATAAGAA                     ----AC  A    CACA         ----TC       C      ------------     -TAA   AA    AGAACATCCTTCACAATCACATTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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