SE1820003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10331
  • Glycine max
  • SE1820003
  • Mutator
  • M3
  • Gm18:39881740-39881992
  • TTATTATTT
  • GGTTTAATTACTCATTTAATCTCTATAGTTACAAAAACTTTCCCTTTTTGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTATTT          C      --AA                             T     TACACACATTTTTTAAT      TATTCCCTACACATATCATTTTAATCCCTTTAAGTCTTGTTTGGACTA
         GGTTTAATTA TCATTT    TCTCTATAGTTACAAAAACTTTCCCTTTT GTCCC                 CTTTTT                                                
         |||||||||| ||||||    ||||||||||||||||||||||||||||| |||||                 ||||||                                                 
         CCAAATTAAT AGTAAA    AGAGATATCAATGTTTTTGAAAGGGAAAA CAGGG                 TTACGA                                                
TTTATTATT          T      CCAG                             T     -----------------      AGTTTCGTAGGGGAAAATCAGGGATGTGTATAGTAAAAATTAGGGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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