SE1820004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10332
  • Glycine max
  • SE1820004
  • Mutator
  • M4
  • Gm02:29631104-29631673
  • TTATTTTTA
  • AGGGTTAATTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTTTT            GTTA      C      TA     A            G     T            GTTTTA            C            CC               C    C       AA   -          T    C   -   -- TTA  TGGCCACGAATATCACCATAAATTGTAGATGATGAGGATGCATTGCTGCTCCGCATTGCAGATCTCCTTATGGGTGCTTGTTGTATGTTCATGGGTGCTTGGAGCGTTAGGATTAAA
        AGGGTTAATTAA    TTAGTC TCAAAC  TGGGG TTTTGAATTTTT GTCCT AAACTATTTTTT      AAAAATTTGGTC CTAAAGAATTTG  ATTATTAAAGATAGT TTTG CGTTAAT  TCT TTGTTAAGTG TGAG TAT CTA  C   TG                                                                                                                     
        ||||||||||||    |||||| ||||||  ||||| |||||||||||| ||||| ||||||||||||      |||||||||||| ||||||||||||  ||||||||||||||| |||| |||||||  ||| |||||||||| |||| ||| |||  |   ||                                                                                                                     C
        TCCCAATTAATT    AATCAG AGTTTG  ACCCC AAAACTTAAAAA CAGGA TTTGATAAAAAA      TTTTTAAACCAG GATTTCTTAAAC  TAATAATTTTTATTA AAAC GCAATTA  AGA GACAATTCAC ACTT CAC GTA  T   TA                                                                                                                     
ATTTTTAT            AAAA      A      TA     -            A     C            ---ATA            A            AA               A    A       -C   A          T    -   A   CT ---  TTCCGTCTAATTTACAGTGCACATACAGTATATGTACGGTGAATACAAAATAATATAAATCCATTTATTAAACTTATAATACAATAATTTTATGTTTTCCTTTTTTCTTCTCAGTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End